![]() ![]() Also, node size is mapped to the degree of the node (number of edges connected to the node) and you can see the hubs of the network as larger nodes. Gene expression values for each node are colored along a color gradient between red and green (where red represents a low expression ratio and green represents a high expression ratio, using thresholds set for the gal4RGexp experiment bundled with Cytoscape in the sampleData/galExpData.pvals file). By default, the galFiltered Style is selected. The session file includes a network, some annotations, and sample visual styles. Load a sample session file: From the main menu, select File → Open, and select the file sampleData/galFiltered.cys. To examine these styles, try out the following example: The Cytoscape distribution includes several predefined visual styles to get you started. These editors will be discussed in further detail below. They are accessed through the Visual Mapping Browser on the Main Panel. ![]() ![]()
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